gapseq
  • News
  • Installation

Usage

  • Basic usage
  • Parameters for network reconstruction
  • Growth medium definition
  • Output files
  • Adapting models
  • pan-draft: species-level models

Database

  • Reference sequences
  • Biochemistry
  • Biomass Reactions

Tutorials

  • Lactic acid bacteria in yogurt production
  • Reconstruction of metabolic networks for archaea
  • Example Workflow for pan-draft
  • Reaction tracing

FAQ

  • What kind of organisms are supported by gapseq?
  • What are the output files of gapseq?
  • What are the RDS output files for?
  • How is pathway completeness calculated in gapeq?
  • Which codon table does gapseq use when translating a nucleotide genome?
gapseq
  • Search

© Copyright 2024, Johannes Zimmermann and Silvio Waschina.

Built with Sphinx using a theme provided by Read the Docs.